Vol 94, No 4 (2017)
- Year: 2017
- Published: 28.08.2017
- Articles: 17
- URL: https://microbiol.crie.ru/jour/issue/view/11
- DOI: https://doi.org/10.36233/0372-9311-2017-4
Full Issue
ORIGINAL RESEARCHES
RETROSPECTIVE ANALYSIS OF BIOLOGICAL PROPERTIES OF FRANCISELLA TULARENSIS COLLECTION STRAINS ISOLATED IN SOUTH SIBERIA (1950 -2015)
Abstract
Aim. Study taxonomic belonging of collection strains of tularemia causative agent based on proteomic and molecular-genetic methods of identification. Materials and methods. 23 strains of tularemia were used in the study, isolated from Krasnoyarsk region and Altai Republic from 1950 to 2015. FT-agar was used for the cultivation. Spectra for time-of-flight mass-spectrometry were collected using Microflex LT (Bruker Daltonics, Germany) and analyzed compared with previously collected enhanced database of MALDI Biotyper 3.0. PC R with specific primers was carried out with electrophoretic visualization of results in real time. Results. F. tularensis strains isolated from south of western Siberia from 1950 to 2010 were established to belong to subspecies holarctica, and 56.3% of those - erythromycin sensitive (1 biovar Erys), the rest - erythromycin-resistant (II biovar EryR). 7 strains isolated after 2011 by citrulline ureidase activity, cleavage of glycerin and presence of pdpA and pdpD fragments of pathogenicity island (FP1) were determined as Central Asian subspecies. Conclusion. Results of a retrospective study of biological properties of tularensis strains isolated from south Siberia have shown the lack of Central Asian subspecies tularemia causative agent in the collection of Irkutsk Institute for Plague Control before 2011. Detection of this subspecies in Russian Federation gives evidence on the necessity to study and analyze problems of epidemiology, ecology and epizootology of Central Asian subspecies tularemia causative agent as well as determination of borders of its spread.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):3-9
3-9
APPLICATION OF TIME-OF-FLIGHT MASS-SPECTROMETRY FOR DETECTION OF CAUSATIVE AGENT OF BRUCELLOSIS IN BLOOD SAMPLES IN EXPERIMENT
Abstract
Aim.Study the possibility to apply time-of-flight mass-spectrometry for detection of causative agent of brucellosis in blood. Materials and methods. Brucella strains: 5 Brucella melitensis and 21 Brucella abortus. Protein profiling in linear mode on MALD1-TOF mass-spectrometer Microflex «Bruker Daltonics». Results. Technique for disinfection and preparation of blood samples was modified and optimized for MALDI-TOF MS analysis. 120 representative protein profiles of sera extract were obtained that contain brucellosis causative agent. A resulting peak-list (super-spectrum) of the studied protein fraction of blood extract of a conditionally healthy human within the studied group was formed and analyzed. Conclusion. A scheme of brucella detection in blood samples by MALDI-TOF MS is proposed, based on detection of a complex of 15 genus-specific fragments. Signals on mass-spectra of extracts of leukocyte fraction of blood, artificially contaminated with brucellosis causative agents are characterized.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):9-17
9-17
BIODIVERSITY AND ANTIBIOTICS RESISTANCE OF OPPORTUNISTIC PATHOGENIC ENTEROBACTERIA ISOLATED FROM SURFACE RESERVOIRS OF ROSTOV-ON-DON
Abstract
Aim. Study biodiversity, sensitivity/resistance to antibacterial preparation (ABP) of opportunistic microorganisms of Enterobacteriaceae family isolated from surface reservoirs of Rostov-on-Don in 2014 - 2016. Materials and methods. Determination of genus and species membership of enterobacteria was carried out by the results of a complex of biochemical tests using MALDI Biotyper program-apparatus unit. Sensitivity to ABP was determined by serial dilution method. Results. 468 strains of opportunistic and pathogenic enterobacteria were isolated during the study. 20 genera, 33 species of microorganisms were identified. (37.0%), Klebsiella (13.2%), Citrobacter (8.0%) predominated. 8.5% of the strains isolated in 2014 were sensitive to ABP, 5.2% - in 2015; strains sensitive to ABP were not detected in 2016. The number of polyresistant isolates has increased during the last 3 years: 40.7% strains in 2014,60.1 % in 2015. 80,0% in 2016. Ceftriaxone, gentamycin and ciprofloxacin had high activity against the isolated enterobacteria. The highest resistance was documented against ampicillin, nalidixic acid, nitro-furane, co-trimoxazole. Conclusion. The data obtained allow to evaluate the dynamics of increase of polyresistant strains of enterobacteria isolated from surface reservoirs.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):17-23
17-23
FEATURES OF IMMUNE RESPONSE DURING VARIOUS SCHEMES OF USE OF BACTERIAL THERAPEUTIC VACCINE IMMUNOVAC VP-4
Abstract
Aim. Study the dynamics of immunologic parameters in patients with chronic bacterial infections during various schemes of administration of Immunovac VP-4 vaccine. Materials and methods. Parameters of systemic immunity and levels of specific antibodies of various isotypes in blood sera and saliva against vaccine antigens of Staphylococcus aureus and Klebsiella pneumoniae were evaluated in patients (20 individuals, 18 - 50 years of age) distributed into 2 groups by vaccine administration type twice (before and 0,5 - 1,5 months after vaccine therapy course). Results. Local vaccination resulted in an increase of only IgA levels in saliva and both bacterial antigens, whereas parameters of systemic immunity before and after vaccination did not differ. Subcutaneous vaccination increased the level of sera antibodies of A- and G- isotypes against both bacterial antigens, normalized the decreased level of CD8" lymphocytes and an increased value of the immune regulating index; a tendency of increase of the percentage of CD3+ T-cells and reduction of the percentage of CD4+ T-helpers was observed. Conclusion. An optimal scheme of a combined vaccine therapy should be developed to obtain a complex effect, that would allow to simultaneously reach long-term local and systemic antibacterial immunity, as well as show immune modulating effect regarding cell compartment.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):23-30
23-30
DOT-IMMUNOASSAY USING GOLD NANOPARTICLE MARKED COLLOID GOLD FOR THE DETECTION OF BOTULINIC TOXIN IN CLINICAL MATERIAL AND FOOD PRODUCTS
Abstract
Aim. Construction of test-systems for dot-immunoassay using colloid gold nanoparticles as a marker of specific antibodies for the detection of botulinic toxin in clinical material and food products. Materials and methods. 20 nm gold nanoparticles were used as a marker of specific antibodies. IgGs were isolated from polyvalent diagnostic sera against type А, В, С, E, F botulin toxins produced by SPC Allergen (Stavropol) with 5000 - 10 000 ME activity. Botulin toxin in clinical material (blood sera) from 3 patients with established botulism clinical diagnosis as well as food product (home-made mushroom soup solyanka) was determined by dot immunoassay on nitrocellulose membrane. Results. Botulin toxin was detected in all the studied samples (blood sera from 3 patients and the soup) that was registered in the patient No. 1 at the 1:2112 dilution of fhe studied sample, in patient No. 2 - 1:32, in patients No. 3 - 1:1056, in the food product - 1:8. Botulin toxin was not detected in the negative control (pure cultures of the dysentery cauzative agents and intestine yersinosis, blood sera of the patient with All and a healthy individual as well as canned beans in tomato sauce and canned green peas). Conclusion. A highly sensitive specific test-system was developed for dot-immunoassay based on the commercial anti-botulin antibodies labelled with colloid gold particles that allows to detect botulin toxins within 2 hours in the sample volume of 1 - 2 microlites .
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):31-35
31-35
DETECTION OF INDEL-MARKERS IN GENOMES OF BURKHOLDERIA PSEUDOMALLEI STRAINS FOR INTRA-SPECIES GENOTYPING
Abstract
Aim. Search for potential INDEL-markers in genomes of Burkholderia pseudomallei strains, as well as evaluation of the possibility of their use for intra-species genotyping. Materials and methods. Full-genome sequences of 25 В. pseudomallei strains with known geographic regions of isolation from GenBank database were studied. INDEL-marker search was carried out using authors’ program Gene Expert. Cluster analysis was carried out using genetic distance by R. Sokal and C. Michener and neighbor joining method. Results. 11 INDEL-markers were detected that allowed to split the studied strains into 13 genotypes. Spectrum of INDEL-patterns characteristic for Australian strains was determined. A possibility of existence of certain phylogeographic patterns of Thailand isolates is shown. Conclusion. A possibility of INDEL-markers to differentiate isolates of B. pseudomallei into 2 geographic populations (Australian and South-eastern Asia origin) that allows to determine the source of melioidosis outbreak and transmission routes of the pathogen is detected.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):35-41
35-41
IMMUNOLOGIC ASPECTS OF PHAGE THERAPY OF INFECTIONS RELATED TO MEDICAL CARE IN NEUROREANIMATION
Abstract
Aim. Evaluate the effect of anti-phage humoral immune response on effectiveness of phage therapy of infections related to medical care (IRMC). Materials and methods. 42 patients on extended mechanical ventilation (MV) in neuroreanimation, 1 time in 2014, 4 times in 2015 and 1 time in 2016 had received bacteriophage cocktail per os - 20 ml including 6 patients - additionally 3-5 times. Effectiveness of phage therapy was evaluated by seeding of IRMC strains from samples of endotracheal aspirate, blood, urine and feces of patients before and after treatment. Results. 87.5% of samples from the patients initially had gram-negative pathogens (Acinetobacter baumannii, Klebsiella pneumoniae, Pseudomonas aeruginosa). Effective sanation for the first episodes of phage therapy was confirmed in 54 - 62.5% of cases. Pharmacokinetic studies have indicated a systemic mechanism of action for enteral forms of bacteriophages. Repeated courses of phage therapy did not result in significant eradication of pathogens. Antiphage immunity after a single administration of the cocktail of bacteriophages with a certain strain composition was detected using ELISA by the presence of specific IgG titers in a range from 1/16 to 1/4096 (in patients not receiving the cocktail antibodies were not detected). Conclusion. Reduction of sanation effect of bacteriophage could be due to formation of anti-phage antibodies after a repeated course in the same patient. Changes of strain composition of phage cocktail of bacteriophages is necessary to preserve results of phage therapy.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):42-48
42-48
MODELLING OF HEPATITIS E IN MINI-PIGS
Abstract
Aim. Experimental reproduction of HEV-infection in mini-pigs and comparative analysis of virological and immunological characteristics of experimental infection. Materials and methods. Wiesenauer minipigs (2 females and 4 males, age 50 - 60 days, weight 5-10 kg) were infected by HEV genotype 3 strain isolated from swine feces in Belgorod region in 2013. The virus was administered as a 10% clarified feces extract (800 pi). Blood (weekly) and feces (daily) were sampled from the animals for 49 days. Anti-HEV IgG were determined in sera samples using DS- ElA-ANTI-HEV-G (Diagnostic Systems) system, HEV RNA in samples of feces extracts and blood sera - RT-PCR. Results. Wiesenauer minipigs were sensitive to HEV genotype 3 infection, infection developed in all the animals after administration of the virus, that was accompanied by the presence of HEV RNA in feces for 2 weeks and seroconversion by anti-HEV. Comparative analysis of virological characteristics of experimental H EV-infection in mini- and standard pigs has shown, that the duration of the infection in mini-pigs is shorter, and seroconversion by anti-HEV occurs earlier. Conclusion. Sensitivity to HEV genotype 3 and lower weight make mini-pigs a comfortable alternative to standard swine and primates for modelling HEV infection in vivo.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):48-54
48-54
YOUNG AGE CHILDREN WITH INTESTINE DYSBIOSIS AS CARRIERS OF ENTEROAGGREGATIVE ESCHERICHIA COLI
Abstract
Aim. Study the prevalence of diarrhea-genic E. coli of the enteroaggregative group in children with intestine dysbiosis. Materials and methods. PCR method was used to study virulence factors in 511 strains of E. coli isolated during bacteriologic study of feces samples from 393 children aged less than 2 years. Sensitivity to antibiotics was determined by disc-diffusion method, results interpretation - according to clinical recommendations Determination of sensitivity of microorganisms to antimicrobial preparations, 2015. Results. 23 enteroaggregative E. coli strains were identified (EAggEC). All the strains had aaf gene coding aggregative-adhesion fimbriae and 4 other genes (aggR, ast, aap, aatA) in various combinations coding virulence factors EAggEC. 19 strains (87%) were not sensitive to antimicrobial preparations. Resistance to extended spectrum cephalosporins was determined by the production of extended spectrum beta-lactamase (ESBL) of CTX-M genetic family and AmpC cephalosporinase. Conclusion. Results of the study have shown that 6% of children with intestine dysbiosis are EAggEC carriers, that gives evidence on the necessity of detection of EAggEC strains - a novel group of diarrhea-genic E. coli not only in patients with diarrhea syndrome, but also using intestine dysbiosis.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):54-58
54-58
MOLECULAR-BIOLOGICAL METHODS OF DIAGNOSTICS FOR INVESTIGATION OF HIV INFECTION TRANSMISSION
Abstract
Aim. Epidemiologic examination of the case of group HIV-1 infection based on data obtained by general diagnostics methods for confirmation of the investigation hypothesis of deliberate HIV infection during heterosexual intercourse. Materials and methods. Sera samples from 8 HIV infected patients (5 female and 3 male) from Veliky Novgorod sent for epidemiologic investigation were used. Determination was carried out based on 1285 nt sequence analysis of polymerase gene segment (pol). Results. The study allowed to identify HIV in clinical samples sent to the expertise and establish phylogenetic connections between virus isolates obtained from both target and control group patients. Analysis of the results allowed to isolate samples grouped in a separate cluster that indicates tight cordial connections between the vims isolates from clinical material of these patients. Patients of the target group were infected with HIV-1 isolate ofthe circulating recombinant form CRF03_AB from the same origin that is confirmed by high homology ofthe nucleotide sequences. Conclusion. Epidemiologic investigation of a group case of HIV-1 infection has determined that the infection of the women of the target group occurred from the same source. Phylogenetic analysis results indicate the presence of an epidemiologic connection within the examined group that confirms the HIV infection transmission and conclusions ofthe investigation. Use of molecular-phylogenetic analysis of data obtained by laboratory diagnostics methods of HIV resistance to antiretroviral preparations allows with anamnestic and investigation information (in the context of available evidence) to investigate cases of HIV infection.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):59-66
59-66
DETECTION OF MARKERS OF HERPES VIRUS INFECTION AND PNEUMOCYSTOSIS IN CHILDREN FROM HIV-INFECTED MOTHERS
Abstract
Aim. Study the role of herpes viruses and pneumocystis in infectious complications in children from HIV-infected mothers. Materials and methods. Sera and blood cells from 59 children from HIV-infected mothers were studied for the presence of various markers of herpes virus infections and pneumocystosis by a complex of methods of modem laboratory diagnostics. Results. Frequency of detection of markers of herpes virus infection was from 10% for chicken pox in children with non-final HIV test to 93% for herpes simplex virus in HIV-infected children from closed organized groups. Signs of active infection in children with laboratory confirmed HIV infection were diagnosed 2.5 times more frequently for HSV infection and chicken pox and 1.8 times more frequently for HHV-6 and pneumocystis than in children with non-final HIV test. Markers of various disease stages with opportunistic infections (01) were detected in children with confirmed HIV-infection: primary acute and latent forms of the infection, reactivation, reconvalescence, whereas in children with non-final HIV test maternal antibodies against herpes virus and pneumocystis predominated. Markers of active infections excluding HSV and HHV-6 were more frequently detected in children from families than in children from closed organized groups. Conclusion. The feature detected - a lower percentage of detection of markers of active forms of 01 in HI V-infected children from social institutions - is determined by the fact that observation of these children is carried out by medical personnel that have the knowledge and experience of prophylaxis of infectious complications in HIV-infected children, whereas quality anti-epidemic regimen is frequently not maintained regarding home children with HIV infection. Another factor facilitating spread of opportunistic infections is the asocial lifestyle of most of the examined families. These data dictate the necessity of enhancement of anti-epidemic regimen and prophylaxis of opportunistic infections in family loci. Not only HIV-infected children, but also all the family members should be examined for markers of herpes virus infection and pneumocystosis in order to detect sources of the infection and timely execution of the prophylaxis measures.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):67-74
67-74
TOPICAL ISSUES IN SCIENCE
PROBLEMS OF FINAL PHASE POLIOMYELITIS ERADICATION PROGRAMME
Abstract
Never before has the world community were not so close to the goal - poliomyelitis eradication. In 2016, the world recorded only 37 cases in the three endemic countries: Pakistan, Afghanistan and Nigeria. Despite the great progress in the final stages of poliomyelitis eradication have problems: the emergence and circulation of vaccine-derived poliovirus and related diseases, vaccine-associated paralytic poliomyelitis, social and political factors affecting of vaccination.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):75-81
75-81
REVIEWS
ANTIGENS OF SURFACE STRUCTURES OF HAEMOPHILUS INFLUENZAE AS PERSPECTIVE VACCINE-CANDIDATES
Abstract
Despite long and successful use of Haemophilus influenzae b (Hib) vaccine, production of the vaccine against non-typed strains of Haemophilus influenzae (NTHi) is only being developed. Difficulties of this work are determined by features of NTHi compared with Hib: lack of polysaccharide capsule, high level of antigenic heterogeneity and specialties of pathogenesis development that includes spread through the organism from mucosa of the respiratory tract. Currently, 15 surface structures of NTHi are being actively studied with the aim of creating the vaccine. PE, P2, P6, PD proteins, outer membrane vesicles (OMVs) and others are among them. Only PD protein currently has practical application, that was used as a carrier with antigenic function in conjugated polysaccharide vaccines against pneumonia (Prevenar; PHiD-CV). Vaccination with these preparations allowed to reduce the total morbidity with acute rhinitis on children by 33 - 52%. However, this result can not be examined as final, thus, research and approbation of the vaccine-candidates continues.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):82-90
82-90
INTERACTION OF SALMONELLA WITH HOST ORGANISM
Abstract
Diseases caused by Salmonella enterica species bacteria remain a healthcare challenge. Salmonella enterica species is divided into typhoid serovars that cause systemic infection and non-typhoid serovars that most frequently have a course of gastroenteritis with a development of inflammatory diarrhea. Both types of salmonella are opportunistic intracellular parasites able to invade and reproduce in both professional and non-professional phagocytes, e.g. M- cells and enterocytes. Invasion of cells and reproduction in them relates to functioning of salmonella pathogenicity island genes that determined synthesis of the third type of secretory system (T3SS). Contrary to the salmonella typhoid group serovars, non-typhoid serovars cause a development of inflammatory diarrhea, and effector molecules of T3SS as well as innate immunity components take part in it.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):91-100
91-100
POSSIBILITIES OF USE OF IMMUNE MODULATORS IN COMPLEX THERAPY OF COMMUNITY-ACQUIRED PNEUMONIAS
Abstract
Community-acquired pneumonia (CAP) has been one the most pressing issues of healthcare due to high morbidity and mortality that are stable. Analysis of literature shows similar trends in the character of immune response of patients with CAP, precisely - formation of immune response via humoral route (Th2) with suppression of cell immune response (Thl), whereas lack of cellular and humoral mechanisms of immunity and dysbalanced cytokine portion determine severity of the infection course. Inclusion of immune modulators into traditional therapy allows to enhance the response to the therapy already being administered. One of the national immune modulators is azoximer bromide (polyoxidonium), its administration allows to reduce the length and severity of the disease, as well as reduce the frequency of development of prolonged forms. Also, immune modulators of bacterial origin have received special interest as of late, and antibacterial therapeutic vaccines are being constructed based on them. Immunovac VP-4 polycomponent vaccine is distinguishable among the national preparations. Clinical-immunological effect of the vaccine has been studied in recent years on different pathologies and methods of administration in adults and children. Features of Immunovac VP-4 effect confirm the primary character of alterations in the immune system, that is the background of a certain pathology and is the reason for inclusion of immune modulating preparations into basic therapy of the diseases.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):101-111
101-111
LICENSED ANTHRAX VACCINES AND EXPERIMENTAL PREPARATIONS AT THE STAGE OF CLINICAL TRIALS
Abstract
High pathogenicity of anthrax agent combined with unique insensitivity of its spore forms to environmental stresses class it among extremely dangerous biological agents. Registered and effectively used anthrax vaccines made invaluable contribution to the improvement of epidemiological situation around the world. Nevertheless, neglect of non-specific prophylaxis may result in dramatic scenarios and require large-scale measures on rectification of the consequences. Efforts on the development of next-generation vaccines are aimed at safety build-up, decrease in frequency of administration, and enhancement of manufacturing technologies. The review contains the key information on licensed anthrax vaccines designed for medical use, both in the territory of the Russian Federation and abroad. Among multiple experimental developments emphasized have been preparations manufactured by various biopharmaceutical companies in compliance with GMP standards, at different phases of clinical trials in 2016.
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):112-126
112-126
СОДЕРЖАНИЕ
CONTENTS
Journal of microbiology, epidemiology and immunobiology. 2017;94(4):127-128
127-128