MLVA-TYPING OF CLINICAL STAMPS OF GENETICALLY CHANGED VIBRIO CHOLERAE BIOTYPE EL TOR INSULATED IN RUSSIA AND UKRAINE IN THE PERIOD OF SEVENTH PANDEMIC CHOLERA

Cover Page


Cite item

Full Text

Abstract

Aim. Conduct in a comparative aspect MLVA-typing of genetically altered cholera vibrio biovar El Tor, isolated from patients during the epidemic (1994) and outbreaks (1993, 1998) in Dagestan with isolates in Mariupol (Ukraine) in 1994-2011 in Moscow (2010, 2012), India (1964, 2006, 2007), Bangladesh 1991, 1994, 2001, 2004) and to establish Phylogenetic connections between strains of cholera vibrios isolated in different years in these territories, to ascertain the source of their drift. Materials and methods. MLVA-tyP-ing was carried out in PCR at 5 variable loci of 35 clinical strains of genetically modified Vibrio cholerae byotyPe El Tor. The obtained amPlicon was studied in the system of automatic caPillary electroPhoresis ExPerion («Bio Rad Laboratories», USA). For Phylogenetic analysis, along with MLVA-genotyPes, 35 strains of Vibrio cholerae from the Institute's collection used Published genotyPes of strains isolated in India, Bangladesh, Haiti. Results. The investigated strains of cholera vibrio are referred to 21 MLVA-tyPes, divided into 2 main clades and 1 seParate branch with clonal clusters and subclusters, each of which contains closely related strains of cholera vibrio genovariants having a different degree of Phylogenetic relationshiP - full or Partial identity of allelic Profiles of five variable loci. The sources of drift of genetically modified Vibrio cholerae byotyPe El Tor to Russia and Ukraine from disadvantaged cholera of India, Bangladesh, Azerbaijan and the countries of the Middle East have been established. Conclusion. The obtained data testify to the PolymorPhism of MLVA-tyPes of genetically altered strains of cholera vibrio of the biologist El Tor, evolved in different years and caused ePidemics or outbreaks of cholera in different territories during different time Periods of the course of the seventh cholera Pandemic, and also suggest the Polyclonal origin of the Vibrio cholerae biovar El Tor and the source of their drift to the territory of the Russian Federation and Ukraine.

About the authors

I. V. Savelieva

Stavropol Research Institute for Plague Control

Author for correspondence.
Email: noemail@neicon.ru
Russian Federation

A. N. Kulichenko

Stavropol Research Institute for Plague Control

Email: noemail@neicon.ru
Russian Federation

V. N. Saveliev

Stavropol Research Institute for Plague Control

Email: noemail@neicon.ru
Russian Federation

D. A. Kovalev

Stavropol Research Institute for Plague Control

Email: noemail@neicon.ru
Russian Federation

O. V. Vasilieva

Stavropol Research Institute for Plague Control

Email: noemail@neicon.ru
Russian Federation

A. M. Zhirov

Stavropol Research Institute for Plague Control

Email: noemail@neicon.ru
Russian Federation

E. I. Eremenko

Stavropol Research Institute for Plague Control

Email: noemail@neicon.ru
Russian Federation

E. I. Podoprigora

Stavropol Research Institute for Plague Control

Email: noemail@neicon.ru
Russian Federation

B. V. Babenyshev

Stavropol Research Institute for Plague Control

Email: noemail@neicon.ru
Russian Federation

I. V. Kuznetsova

Stavropol Research Institute for Plague Control

Email: noemail@neicon.ru
Russian Federation

L. V. Guseva

Stavropol Research Institute for Plague Control

Email: noemail@neicon.ru
Russian Federation

References

  1. Водопьянов А.С., Водопьянов С.О., Мишанькин М.Б., Сучков И.Ю. Вариабельные тандемные повторы, выявленные при компьютерном анализе генома Vibrio cholerae. Биотехнология, 2001, 6:85-88.
  2. Домашенко О.Н., Беломеря Т.А., Мартынова Н.В., Дараген Г.М., Демкович О.О., Малахова Ю.В., Землянская Г.И., Попова Д.М. Холера в Приазовье. Журнал инфектологии, 2015, 7(2):2-97.
  3. Мишанькин Б.Н., Романова Ю.М., Ломов Ю.М. Vibrio cholerae О139, выделенные от людей и из воды открытых водоемов: сравнительное генотипирование. Журн. микробиол. 2000, 3:3-7.
  4. Савельев В.Н., Васильева О.В., Савельева И.В., Солодовников Б.В., Бабенышев Б.В., Грижебовский Г.М., Дорошенко И.Г. Ретроспективный анализ генотипов клинических штаммов холерного вибриона Эль Тор, выделенных на Кавказе в период седьмой пандемии холеры. Холера и патогенные для человека вибрионы. Ростов-на-Дону, 2010, 23:81-86.
  5. Савельева И.В., Безсмертный В.Е., Савельев В.Н. Серологическая диагностика современной холеры с применением липосомального энтеротоксического диагностикума в реакции связывания комплемента. Инфекция и иммунитет. 2013, 3:286-287.
  6. Смирнова Н.И., Кульшань Т.А., Краснов Я.М. MLVA-типирование клинических штаммов Vibrio cholerae, изолированных в разные периоды текущей пандемии холеры. Молекулярная генетика, микробиология и вирусология. 2015, 33(1):15-22.
  7. Boerlin P., Bannerman E., Ischer F. et al. Typing Listeria monocytogenes:a comparison of random amplification of polymorphic DNA with five methods. Res.Microbiol. 1995, 146: 35-49.
  8. Choi S.U., Lee J.H., Jeon Y.S. et al. Multilocus variable-number tandem repeat analysis of Vibrio cholerae O1 El Tor strains harbouring classical toxin B. J.Med. Microbiol. 2010, 59(3):763-769.
  9. Choi S.Y., Lee J.H., Kim E.J. et al. Classical RS1 and environmtntal RS1 RS1 elements in Vibrio cholerae O1 El Tor strains harbouring a tandem repeat of CTX prophage: revisiting Mozambique in 2005. J.Med. Microbiol. 2010, 59(3):302-308.
  10. Danin-Poleg Y., Cohen L.A., Gancz H. et al. Vibrio cholerae Strain Typing and Phylogene Stady Based on Simple Sequence Repeats. J. Clin. Microbiol. 2007, 45(3):736-746.
  11. Frerichs R.R., Keim P.S., Barrais R., Piarroux R. Nepalese origin of cholera epidemic in Haiti. Clin. Microbiol. Infect. 2012,18:E158-E163.
  12. Heidelberg J.F., Eisen J.A., Nelson W.C. et al. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholera. Nature. 2000, 406:477-483.
  13. Kuleshov K.V. et al. Comparative genomic analysis of two isolates of Vibrio cholerae O1 Ogawa El Tor isolated during outbreak in Mariupol in 2011. Infection, Genetics and Evolution. 2016, 44, October: 471-478.
  14. Lain C., Octavia S., Reeves R.P., Lan R. Multilocus variable-number tandem repeat analysis of 7th pandemic Vibrio cholerae. BMC Microbiol. 2012, 12(82):1471-2180.
  15. Olive D.M., Bean P. Principles and applications of methods for DNA-based typing of microbial organisms. J. Clin. Microbiol. 1999, 37:1661-1669.
  16. Paul R. Hunter, Michael A. Huston. Numerical index of the Discriminatory Ability of Typing Systems: an Application of Simpson's index of Diversity. J. of Clinical Microbiology, 1988 Nov. 26(11):2465-2466.
  17. Rashed S.M., Azman A.S., Alam M. et al. Genetic Variation of Vibrio cholerae O1 during Outbreaks, Bangladesh, 2010-2011. Emerg.Infect.Dis. 2014. 20 (1):54-60.
  18. Van Belkum A., Struelens M., de Visser A. et al. Role of genomic typing in taxonomy, evolutionary genetics, and microbial epidemiology. Clin. Mirobiol. Rev. 2001, 14:547-560.
  19. Wiedmann M. Subtyping of bacterial food-borne pathogens. Nutr. Rev. 2002, 60:201-208.

Supplementary files

Supplementary Files
Action
1. JATS XML

Copyright (c) 2018 Savelieva I.V., Kulichenko A.N., Saveliev V.N., Kovalev D.A., Vasilieva O.V., Zhirov A.M., Eremenko E.I., Podoprigora E.I., Babenyshev B.V., Kuznetsova I.V., Guseva L.V.

Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.

СМИ зарегистрировано Федеральной службой по надзору в сфере связи, информационных технологий и массовых коммуникаций (Роскомнадзор).
Регистрационный номер и дата принятия решения о регистрации СМИ: ПИ № ФС77-75442 от 01.04.2019 г.


This website uses cookies

You consent to our cookies if you continue to use our website.

About Cookies