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Changes in the etiological structure of severe acute respiratory viral infections in children and adults under the influence of the COVID-19 pandemic

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1. Title Title of document Changes in the etiological structure of severe acute respiratory viral infections in children and adults under the influence of the COVID-19 pandemic
2. Creator Author's name, affiliation, country Anna A. Sominina; Smorodintsev Research Institute of Influenza; Россия
2. Creator Author's name, affiliation, country Darya M. Danilenko; Smorodintsev Research Institute of Influenza; Россия
2. Creator Author's name, affiliation, country Andrey B. Komissarov; Smorodintsev Research Institute of Influenza; Россия
2. Creator Author's name, affiliation, country Maria M. Pisareva; Smorodintsev Research Institute of Influenza; Россия
2. Creator Author's name, affiliation, country Tamila D. Musaeva; Smorodintsev Research Institute of Influenza; Россия
2. Creator Author's name, affiliation, country Kirill A. Stolyarov; Smorodintsev Research Institute of Influenza; Россия
2. Creator Author's name, affiliation, country Olga I. Afanasyeva; Smorodintsev Research Institute of Influenza; Россия
2. Creator Author's name, affiliation, country Veronika S. Timonina; St. Olga Children's City Hospital; Россия
2. Creator Author's name, affiliation, country Evgeny V. Venev; Smorodintsev Research Institute of Influenza; Россия
2. Creator Author's name, affiliation, country Tatiana P. Levanyuk; Smorodintsev Research Institute of Influenza; Россия
2. Creator Author's name, affiliation, country Elizaveta A. Smorodintseva; Smorodintsev Research Institute of Influenza; Россия
2. Creator Author's name, affiliation, country Olga G. Kurskaya; Federal Research Center for Fundamental and Translational Medicine; Россия
2. Creator Author's name, affiliation, country Alexander M. Shestopalov; Federal Research Center for Fundamental and Translational Medicine; Россия
2. Creator Author's name, affiliation, country Evgenya V. Lelenkova; Federal Research Institute of Viral Infections “Viromе”; Россия
2. Creator Author's name, affiliation, country Alexander V. Semenov; Federal Research Institute of Viral Infections “Viromе”; Россия
2. Creator Author's name, affiliation, country Dmitry A. Lioznov; Smorodintsev Research Institute of Influenza; First St. Petersburg State Medical University named after Academician I.P. Pavlov; Россия
3. Subject Discipline(s)
3. Subject Keyword(s) influenza; parainfluenza; SARS-CoV-2; COVID-19; respiratory syncytial virus; rhinoviruses; adenoviruses; metapneumovirus; etiology; surveillance; hospital
4. Description Abstract

Introduction. The traditional surveillance system for influenza and ARVI provides a general description of epidemics, but does not provide information on the age-related characteristics of the etiology and clinical peculiarities of severe acute respiratory diseases (SARI) in hospitalized patients.

Aim. To monitor the etiology of SARI in hospitalized children and adults, assessing the impact of the COVID-19 pandemic on this process.

Materials and methods. Standardized clinical and laboratory monitoring of SARI among 18,458 hospitalized patients was carried out in hospitals in three cities of Russia with weekly PCR detection of 11 types of pathogens.

Results. According to the investigation of hospitalized patients with SARI for the period from 2018 to 2023, the viral etiology of respiratory diseases was deciphered in 58.3% of cases. Weekly monitoring showed a change in the etiological mosaic of SARI pathogens during the SARS-CoV-2 pandemic with a sharp decrease in the frequency of detection of influenza and respiratory syncytial virus (RSV) during the 2020–2021 season against the background of a significant increase of metapneumovirus and rhinovirus infections in children. During the 2022-2023 season an increase in the proportion of RSV infection in children under 6 years of age (up to 36.2%) was noted against the background of a significant decrease in the frequency of SARS-CoV-2. In the intensive care units (ICU), RSV infection was most often in children during the post-pandemic period (up to 30.1–53.6% of positive cases, p < 0.001); in adults, SARS-CoV-2 was mostly detected (76,5–100% of cases, p < 0.001).

Conclusion. Hospital surveillance data significantly complements the epidemiological information obtained in the traditional surveillance system. Monitoring of infections has shown a continuously changing etiological infrastructure of SARI, with the disappearance of influenza and RSV during the COVID-19 pandemic and their return to circulation in the post-pandemic period.

5. Publisher Organizing agency, location Central Research Institute for Epidemiology
6. Contributor Sponsor(s) Ministry of Health of the Russian Federation (AAAA-A18-118022790102-7)
Ministry of Health of the Russian Federation (121051900143-7)
Fondation 328 JOURNAL OF MICROBIOLOGY, EPIDEMIOLOGY AND IMMUNOBIOLOGY. 2024; 101(3) DOI: https://doi.org/10.36233/0372-9311-532 ORIGINAL RESEARCHES © Sominina A.A., Danilenko D.M., Komissarov A.B., Pisareva M.M., Musaeva T.D., Stolyarov K.A., Afanasyeva O.I., Timonina V.S., Venev E.V., Levanyuk T.P., Smorodintseva E.A., Kurskaya O.G., Shestopalov A.M., Lelenkova E.V., Semenov A.V., Lioznov D.A., 2024 pur l’epidemiologie de la grippe (Engt: 00079655)
Fondation 328 JOURNAL OF MICROBIOLOGY, EPIDEMIOLOGY AND IMMUNOBIOLOGY. 2024; 101(3) DOI: https://doi.org/10.36233/0372-9311-532 ORIGINAL RESEARCHES © Sominina A.A., Danilenko D.M., Komissarov A.B., Pisareva M.M., Musaeva T.D., Stolyarov K.A., Afanasyeva O.I., Timonina V.S., Venev E.V., Levanyuk T.P., Smorodintseva E.A., Kurskaya O.G., Shestopalov A.M., Lelenkova E.V., Semenov A.V., Lioznov D.A., 2024 pur l’epidemiologie de la grippe (Engt: 00090223)
Fondation 328 JOURNAL OF MICROBIOLOGY, EPIDEMIOLOGY AND IMMUNOBIOLOGY. 2024; 101(3) DOI: https://doi.org/10.36233/0372-9311-532 ORIGINAL RESEARCHES © Sominina A.A., Danilenko D.M., Komissarov A.B., Pisareva M.M., Musaeva T.D., Stolyarov K.A., Afanasyeva O.I., Timonina V.S., Venev E.V., Levanyuk T.P., Smorodintseva E.A., Kurskaya O.G., Shestopalov A.M., Lelenkova E.V., Semenov A.V., Lioznov D.A., 2024 pur l’epidemiologie de la grippe (Engt: 00100527)
Fondation 328 JOURNAL OF MICROBIOLOGY, EPIDEMIOLOGY AND IMMUNOBIOLOGY. 2024; 101(3) DOI: https://doi.org/10.36233/0372-9311-532 ORIGINAL RESEARCHES © Sominina A.A., Danilenko D.M., Komissarov A.B., Pisareva M.M., Musaeva T.D., Stolyarov K.A., Afanasyeva O.I., Timonina V.S., Venev E.V., Levanyuk T.P., Smorodintseva E.A., Kurskaya O.G., Shestopalov A.M., Lelenkova E.V., Semenov A.V., Lioznov D.A., 2024 pur l’epidemiologie de la grippe (Engt: 00111470)
Fondation 328 JOURNAL OF MICROBIOLOGY, EPIDEMIOLOGY AND IMMUNOBIOLOGY. 2024; 101(3) DOI: https://doi.org/10.36233/0372-9311-532 ORIGINAL RESEARCHES © Sominina A.A., Danilenko D.M., Komissarov A.B., Pisareva M.M., Musaeva T.D., Stolyarov K.A., Afanasyeva O.I., Timonina V.S., Venev E.V., Levanyuk T.P., Smorodintseva E.A., Kurskaya O.G., Shestopalov A.M., Lelenkova E.V., Semenov A.V., Lioznov D.A., 2024 pur l’epidemiologie de la grippe (00123945/EF-2021-19956)
7. Date (DD-MM-YYYY) 16.07.2024
8. Type Status & genre Peer-reviewed Article
8. Type Type Research Article
9. Format File format
10. Identifier Uniform Resource Identifier https://microbiol.crie.ru/jour/article/view/18618
10. Identifier Digital Object Identifier (DOI) 10.36233/0372-9311-532
10. Identifier eLIBRARY Document Number (EDN) jmtwkj
11. Source Title; vol., no. (year) Journal of microbiology, epidemiology and immunobiology; Vol 101, No 3 (2024)
12. Language English=en en
13. Relation Supp. Files Fig. 1. Age distribution of patients with influenza, COVID-19 and other acute respiratory infections included in the study. (102KB)
Fig. 2. Changes in the frequency of laboratory-confirmed cases of influenza, ARVI (total) and COVID-19 among hospitalized patients over a 5-year period. (309KB)
Fig. 3. Monitoring of PCR-detection of influenza A(H1N1)pdm09, A(H3N2) and В viruses among hospitalized patients for 5 consecutive seasons in the hospital surveillance system. (350KB)
Fig. 4. Changes in the etiological mosaic of the distribution of ARVI pathogens in the development of severe forms of diseases requiring hospitalization due to the development of the COVID-19 pandemic. (512KB)
14. Coverage Geo-spatial location, chronological period, research sample (gender, age, etc.)
15. Rights Copyright and permissions Copyright (c) 2024 Sominina A.A., Danilenko D.M., Komissarov A.B., Pisareva M.M., Musaeva T.D., Stolyarov K.A., Afanasyeva O.I., Timonina V.S., Venev E.V., Levanyuk T.P., Smorodintseva E.A., Kurskaya O.G., Shestopalov A.M., Lelenkova E.V., Semenov A.V., Lioznov D.A.
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