<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE root>
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="review-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Journal of microbiology, epidemiology and immunobiology</journal-id><journal-title-group><journal-title xml:lang="en">Journal of microbiology, epidemiology and immunobiology</journal-title><trans-title-group xml:lang="ru"><trans-title>Журнал микробиологии, эпидемиологии и иммунобиологии</trans-title></trans-title-group></journal-title-group><issn publication-format="print">0372-9311</issn><issn publication-format="electronic">2686-7613</issn><publisher><publisher-name xml:lang="en">Central Research Institute for Epidemiology</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">13892</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>Articles</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>Статьи</subject></subj-group><subj-group subj-group-type="article-type"><subject>Review Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">RAMAN SPECTROSCOPY IN MICROBIOLOGICAL DIAGNOSTICS: ACHIEVEMENTS, ADVANTAGES, PERSPECTIVES</article-title><trans-title-group xml:lang="ru"><trans-title>СПЕКТРОСКОПИЯ КОМБИНАЦИОННОГО РАССЕЯНИЯ СВЕТА В МИКРОБИОЛОГИЧЕСКОЙ ДИАГНОСТИКЕ: ДОСТИЖЕНИЯ, ПРЕИМУЩЕСТВА, ПЕРСПЕКТИВЫ</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Naumik</surname><given-names>A. V</given-names></name><name xml:lang="ru"><surname>Наумик</surname><given-names>А. В</given-names></name></name-alternatives><xref ref-type="aff" rid="aff1"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Pasteur Research Institute of Epidemiology and Microbiology, St. Petersburg, Russia</institution></aff><aff><institution xml:lang="ru">НИИ эпидемиологии и микробиологии им. Пастера, Санкт-Петербург</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2013-08-15" publication-format="electronic"><day>15</day><month>08</month><year>2013</year></pub-date><volume>90</volume><issue>4</issue><issue-title xml:lang="en">NO4 (2013)</issue-title><issue-title xml:lang="ru">№4 (2013)</issue-title><fpage>100</fpage><lpage>110</lpage><history><date date-type="received" iso-8601-date="2023-06-09"><day>09</day><month>06</month><year>2023</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2013, Naumik A.V.</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2013, Наумик А.В.</copyright-statement><copyright-year>2013</copyright-year><copyright-holder xml:lang="en">Naumik A.V.</copyright-holder><copyright-holder xml:lang="ru">Наумик А.В.</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0</ali:license_ref></license></permissions><self-uri xlink:href="https://microbiol.crie.ru/jour/article/view/13892">https://microbiol.crie.ru/jour/article/view/13892</self-uri><abstract xml:lang="en"><p>Despite all the diversity of existing methods of detection of microorganisms the question of accelerated diagnostics of causative agents of severe diseases, nosocomial infections and other microbial agents that have epidemiologic significance remains unsolved. In the cases when the result of the study must be available as soon as possible, methods that do not require special prolonged preparation of the studied material and isolation of pure culture of microorganisms are necessary. These include optical-spectral methods, among those combinative light scattering spectroscopy or Raman spectroscopy deserves the most attention, the review being dedicated to its application. The ability to obtain information on components comprising the studied sample within several minute allows to use Raman spectroscopy in many fields of biology and medicine. High specificity of the method is based on absolute uniqueness of specters of various substances and in practice is 96-97%, sensitivity - 95%. Full automation of the process, use of the newest mathematical apparatus for readout and provision of the results of the study allow to avoid the effect of human factor and increase the objectivity of the data obtained. Analytical reliability, timely reception of the result and economical effectiveness entitle to consider Raman spectrometry as a perspective universal express method in microbiological diagnostics.</p></abstract><trans-abstract xml:lang="ru"><p>При всем многообразии существующих методов выявления микроорганизмов остается нерешенным вопрос об ускоренной диагностике возбудителей тяжелых заболеваний, внутрибольничных инфекций и других микробных агентов, имеющих эпидемиологическое значение. В тех случаях, когда необходимо иметь результат исследования в течение кратчайшего срока, необходимы методы, не требующие специальной длительной подготовки исследуемого материала и выделения чистой культуры микроорганизмов. К ним относятся оптико-спектральные методы, среди которых наибольшего внимания заслуживает спектроскопия комбинационного рассеяния света, или рамановская спектроскопия, применению которой посвящен данный обзор. Возможность получения в течение нескольких минут информации о входящих в состав изучаемой пробы компонентах позволяет использовать рамановскую спектроскопию во многих отраслях биологии и медицины. Высокая специфичность метода основана на абсолютной уникальности спектров различных веществ и на практике составляет 96 - 97%, чувствительность - 95%. Полная автоматизация процесса, использование новейшего математического аппарата для считывания и предоставления результатов исследования позволяют избежать влияния человеческого фактора и повышают объективность полученных данных. Аналитическая надежность, своевременность получения результата и экономическая эффективность дают право рассматривать спектрометрию комбинационного рассеяния света в качестве перспективного универсального экспрессного метода в микробиологической диагностике.</p></trans-abstract><kwd-group xml:lang="en"><kwd>microbiological diagnostics</kwd><kwd>surface enhanced Raman spectroscopy (SERS)</kwd><kwd>confocal microscopy</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>микробиологическая диагностика</kwd><kwd>поверхностно-усиленная рамановская спектроскопия (ПУРС)</kwd><kwd>конфокальная микроскопия</kwd></kwd-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Беккер Ю. Спектроскопия. М., Техносфера, 2009.</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Еремин С.К., Изотов Б.Н., Веселовская Н.В. Анализ наркотических средств. М., Мысль, 1993.</mixed-citation></ref><ref id="B3"><label>3.</label><mixed-citation>Жебрун А.Б., Ценева Г.Я., Хамдулаева Г.Н. Бактериологическая безопасность при дифтерии: от классических методов к современным миниатюрным устройствам специального микробиологического контроля. Биотехносфера. 2012, 1 (19): 20-23.</mixed-citation></ref><ref id="B4"><label>4.</label><mixed-citation>Замалеева А.И. Иммобилизация наноматериалов на поверхности живых клеток эукариот и прокариот. Автореф. дис. канд. биол. наук. Казань, 2010.</mixed-citation></ref><ref id="B5"><label>5.</label><mixed-citation>Кишкун А.А., Гузовский А.Л. Лабораторные информационные системы и экономические аспекты деятельности лаборатории. М., Лабора, 2007.</mixed-citation></ref><ref id="B6"><label>6.</label><mixed-citation>Клиническая лабораторная диагностика: национальное руководство. В.В. Долгов, В.В. Меньшиков (ред.). М., ГЭОТАР-Медиа, 2012.</mixed-citation></ref><ref id="B7"><label>7.</label><mixed-citation>Меньшиков В.В. Исследования вне лаборатории. Средства, технологии, условия применения. М., Агат-Мед, 2008.</mixed-citation></ref><ref id="B8"><label>8.</label><mixed-citation>Михайлова Д.О., Бобылева З.Д., Базарный В.В. Диагностическое значение различных иммунологических методов лабораторной диагностики легионеллеза. Журн. микро-биол. 2008, 2: 51-53.</mixed-citation></ref><ref id="B9"><label>9.</label><mixed-citation>Набиев И. Р., Ефремов Р. Г., Чуманов Г.Д. Гигантское комбинационное рассеяние и его применение к изучению биологических молекул. Успехи физических наук. 1988, 154 (3): 459-495.</mixed-citation></ref><ref id="B10"><label>10.</label><mixed-citation>Шмидт В. Оптическая спектроскопия для химиков и биологов. М., Техносфера, 2007.</mixed-citation></ref><ref id="B11"><label>11.</label><mixed-citation>Энциклопедия клинических лабораторных тестов. Н.Тица (ред.). М., Лабинформ, 1997.</mixed-citation></ref><ref id="B12"><label>12.</label><mixed-citation>Alexander T., Le D. Characterization of a commercialized SERS-active substrate and its application to the identification of intact Bacillus endospores. Appl. Opt. 2007, 46 (18): 38783890.</mixed-citation></ref><ref id="B13"><label>13.</label><mixed-citation>Barhoumi A., Zhang D., Tam F. et al. Surface-enhanced Raman spectroscopy of DNA. J. Am. Chem. Soc. 2008, 130 (16): 5523-5529.</mixed-citation></ref><ref id="B14"><label>14.</label><mixed-citation>Benevides J., Overman S., Thomas G. Raman spectroscopy of proteins. Curr. Protoc. Protein. Sci. 2004, Chapter 17: Unit 17.8.</mixed-citation></ref><ref id="B15"><label>15.</label><mixed-citation>Choo-Smith L.P., Edwards H.G., Endtz H.P. et al. Medical applications ofRaman spectroscopy: from proof of principle to clinical implementation. Biopolymers. 2002, 67 (1): 1-9.</mixed-citation></ref><ref id="B16"><label>16.</label><mixed-citation>Chowdary M.V., Kumar K.K., Kurien J. et al. Discrimination ofnormal, benign, and malignant breast tissues by Raman spectroscopy. Biopolymers. 2006, 83: 556-569.</mixed-citation></ref><ref id="B17"><label>17.</label><mixed-citation>Fenollar F., Roux V., Stein A. Analysis of 525 samples to determine the usefulness of PCR amplification and sequencing of the 16S rRNA gene for diagnosis of bone and joint infections. J. Clin. Microbiol. 2006, 3: 1018-1028.</mixed-citation></ref><ref id="B18"><label>18.</label><mixed-citation>Gessner R., Rosch P., Kiefer W. et al. Raman spectroscopy investigation ofbiological materials by use of etched and silver coated glass fiber tips. Biopolymers. 2002, 67 (4-5): 327-330.</mixed-citation></ref><ref id="B19"><label>19.</label><mixed-citation>Grow A., Wood L., Claycomb J. et al. New biochip technology for label-free detection of pathogens and their toxins. J. Microbiol. Methods. 2003, 53 (2): 221-233.</mixed-citation></ref><ref id="B20"><label>20.</label><mixed-citation>Haka A.S., Shafer-Peltier K.E., Fitzmaurice M. et al. Diagnosing breast cancer by using Raman spectroscopy. Proc. Natl. Acad. Sci. U S A 2005, 102: 12371-12376.</mixed-citation></ref><ref id="B21"><label>21.</label><mixed-citation>Harrison G.R., Lord R.C. Practical Spectroscopy. New Ybrk, 1948.</mixed-citation></ref><ref id="B22"><label>22.</label><mixed-citation>Howell S., Haffajee A., Pagonis T. et al. Laser raman spectroscopy as a potential chair-side microbiological diagnostic device. J. Endod. 2011, 37 (7): 968-972.</mixed-citation></ref><ref id="B23"><label>23.</label><mixed-citation>Ivleva N.P, Wagner M, Horn H.et al. In situ surface-enhanced Raman scattering analysis of biofilm. Anal. Chem. 2008, 80 (22): 8538-8544.</mixed-citation></ref><ref id="B24"><label>24.</label><mixed-citation>Jaanalves G.T. Luminescense and Ebsorbtion of hybrid хerogels doped with PbS Nanoparticles prepared by gas diffusion method. Materials Science Forum. 2006: 1221-1224.</mixed-citation></ref><ref id="B25"><label>25.</label><mixed-citation>Kem W., Tu C., Williams R. et al. Circular dichroism and laser Raman spectroscopic analysis of the secondary structure of Cerebratulus lacteus toxin B-IV. J. Protein Chem. 1990, 9 (4): 433-443.</mixed-citation></ref><ref id="B26"><label>26.</label><mixed-citation>Kim N., Lee S., Moskovits M. Aptamer-mediated surface-enhanced Raman spectroscopy intensity amplification. Nano Lett. 2010, 10 (10): 4181-4185.</mixed-citation></ref><ref id="B27"><label>27.</label><mixed-citation>Kinalwa M., Blanch E.W., Doig A.J. Determination ofprotein fold class from Raman or Raman optical activity spectra using random forests. Protein Sci. 2011, 20 (10): 1668-1674.</mixed-citation></ref><ref id="B28"><label>28.</label><mixed-citation>Li L., Hutter T., Finnemore A.S. et al. Metal oxide nanoparticle mediated enhanced Raman scattering and its use in direct monitoring of interfacial chemical reactions. Nano Lett.2012, 12 (8): 4242-4246.</mixed-citation></ref><ref id="B29"><label>29.</label><mixed-citation>Maquelin K., Choo-Smith L., van Vreeswijk T. et al. Raman spectroscopic method for identification of clinically relevant microorganisms growing on solid culture medium. Anal. Chem. 2000, 72 (1): 12-19.</mixed-citation></ref><ref id="B30"><label>30.</label><mixed-citation>Matousek P., Stone N. Prospects for the diagnosis of breast cancer by noninvasive probing of calcifications using transmission Raman spectroscopy. J. Biomed. Opt. 2007, 12: 024008.</mixed-citation></ref><ref id="B31"><label>31.</label><mixed-citation>Mengqiu Li, Jian Xu, Maria Romero-Gonzalez.et al. Single cell Raman spectroscopy for cell sorting and imaging. Curr. Opin. in Biotechnol. 2012, 23: 56-63.</mixed-citation></ref><ref id="B32"><label>32.</label><mixed-citation>Moore B., Stevenson L., Watt A. et al. Rapid and ultra-sensitive determination of enzyme activities using surface-enhanced resonance Raman scattering. Nat. Biotechnol. 2004, 22 (9): 1133-1138.</mixed-citation></ref><ref id="B33"><label>33.</label><mixed-citation>Nikula T. A human Immunochip cDNA microarray provides a comprehensive tool to study immune responses. J. Immunol. Meth. 2005, 1-2: 122-134.</mixed-citation></ref><ref id="B34"><label>34.</label><mixed-citation>Nolan J., Duggan E., Liu E. et al. Single cell analysis using surface enhanced Raman scattering (SERS) tags. Methods. 2012, 57 (3): 272-279.</mixed-citation></ref><ref id="B35"><label>35.</label><mixed-citation>Ochsenktihn M., Borek J., Phelps R. et al. Redox potential dependence of peptide structure studied using surface enhanced Raman spectroscopy. Nano Lett. 2011, 11 (7): 2684-2688.</mixed-citation></ref><ref id="B36"><label>36.</label><mixed-citation>Qian J., Jiang L., Cai F. et al. Fluorescence-surface enhanced Raman scattering co-functionali-zed gold nanorods as near-infrared probes for purely optical in vivo imaging. Biomaterials. 2011, 32: 1601-1610.</mixed-citation></ref><ref id="B37"><label>37.</label><mixed-citation>Qiang Tu, Chang Chang. Diagnostic applications of Raman spectroscopy. Nanomedicine: Nanotechnology, Biology, and Medicine. 2012, 8: 545-558.</mixed-citation></ref><ref id="B38"><label>38.</label><mixed-citation>Schmit V., Martoglio R., Carron K. Anal. Chem. 2012, 84 (9): 4233-4236.</mixed-citation></ref><ref id="B39"><label>39.</label><mixed-citation>Sebastian W., Tyler W, Thomas H. Chemical analysis in vivo and in vitro by Raman spectroscopy from single cells to humans. Curr. Opin. Biotechnol. 2009, 20: 63-73.</mixed-citation></ref><ref id="B40"><label>40.</label><mixed-citation>Smith W. Practical understanding and use of surface enhanced Raman scattering/surface enhanced resonance Raman scattering in chemical and biological analysis. Chem. Soc. Rev. 2008, 37 (5): 955-964.</mixed-citation></ref><ref id="B41"><label>41.</label><mixed-citation>Stockel S., Meisel S., Elschner M. et al. Identification of Bacillus anthracis via Raman Spectroscopy and Chemometric Approaches. Anal. Chem. 2012, 84 (22): 9873-9880.</mixed-citation></ref><ref id="B42"><label>42.</label><mixed-citation>Takamatsu T., Harada I., Hayashi K. Raman spectra of some snake venom components. Biochim. Biophys. Acta. 1980, 622 (2): 189-200.</mixed-citation></ref><ref id="B43"><label>43.</label><mixed-citation>Thomas G. New structural insights from Raman spectroscopy of proteins and their assemblies. Biopolymers. 2002, 67 (4-5): 214-225</mixed-citation></ref><ref id="B44"><label>44.</label><mixed-citation>Thomas G. Raman spectroscopy of protein and nucleic acid assemblies. Annu. Rev. Biophys. Biomol. Struct. 1999, 28: 1-27.</mixed-citation></ref><ref id="B45"><label>45.</label><mixed-citation>Tripathi A., Jabbour R Treado P. et al. Waterborne pathogen detection using Raman spectroscopy Appl. Spectrosc. 2008, 62 (1): 1-9.</mixed-citation></ref><ref id="B46"><label>46.</label><mixed-citation>Webb-Robertson B., Bailey V., Fansler S. et al. Spectral signatures for the classification of microbial species using Raman spectra. Anal. Bioanal. Chem. 2012, 404 (2): 563-572.</mixed-citation></ref></ref-list></back></article>
